Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., MSHA biogenesis protein MshE (RefSeq) from Shewanella amazonensis SB2B

 Score =  341 bits (874), Expect = 5e-98
 Identities = 195/466 (41%), Positives = 290/466 (62%), Gaps = 24/466 (5%)

Query: 47  SMEALVETKRVVKHAFQLIELSQAEFESKLTQVYQRDSSEAR---QLMEDIGADSDDFFS 103
           ++E L+  KR+      L+   +A+       +Y+R    A+   QL E+  AD  + F 
Sbjct: 116 NLEVLLAPKRL-----DLVVAPEAQLMQAFDNLYRRTEQIAQMAGQLEEEYAAD--EAFD 168

Query: 104 LAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLRE 163
           LA          +S+ +  ++KL+ ++  +A++  ASDIHIE  +K+L IR RVDG L+E
Sbjct: 169 LAALTAG-----DSDSETTVVKLLQSIFEDAVQMRASDIHIEPGDKSLRIRQRVDGHLQE 223

Query: 164 VLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVV 223
            +     +++ LV R+K+MA LDI+EKR+PQDGR  + + G  +DVR+STMP  HGE VV
Sbjct: 224 TILNEVTIAAALVLRLKLMAGLDISEKRLPQDGRFHMEVKGHKIDVRISTMPIYHGESVV 283

Query: 224 MRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 283
           MRLLD++A  L L+  GM        R+ IKRPHG++LVTGPTGSGK+TTLY  L ELN+
Sbjct: 284 MRLLDQSAGLLTLNETGMPDAILQRVRKQIKRPHGMLLVTGPTGSGKTTTLYGILSELNT 343

Query: 284 SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQI 343
           ++R I+TVEDP+E+ +  I Q QVN ++ + F+  LR  LRQDPD++MVGE+RD ET +I
Sbjct: 344 ADRKIITVEDPVEYQLPRINQVQVNHKIGLNFSNVLRTTLRQDPDIIMVGEMRDHETVEI 403

Query: 344 AVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEP 403
            ++ +LTGH V+STLHTN AV +  RL DMG   +L++S+L  ++AQRLVR +C +C   
Sbjct: 404 GLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCQNCAVD 463

Query: 404 YEADKEQRKLFDSKKK----EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIH 459
           Y+   + +    S  K            TGC  C+  GYRGR GI ELL +D+A+ + + 
Sbjct: 464 YQLTSQDKAWLTSVSKGVDFSQARFRMGTGCQSCSGTGYRGRIGIFELLELDEAMVDAMR 523

Query: 460 SEAGEQAMEKHIRAT---TPSIRDDGLDKVRQGITSLEEVMRVTKE 502
           +    QA  +   A+   TP +    L+ ++QG+T++EEV R+ ++
Sbjct: 524 T-GNPQAFAQAAYASPNFTP-LLISALNYLKQGMTTIEEVARLVED 567