Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., general secretion pathway protein E (RefSeq) from Shewanella amazonensis SB2B

 Score =  667 bits (1720), Expect = 0.0
 Identities = 350/501 (69%), Positives = 409/501 (81%), Gaps = 4/501 (0%)

Query: 3   EMVISPAERQSIR-RLPFSFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHA 61
           E  +  A R + R RLPF+FA+RF LVL  +E      +YY     + AL+E +R    A
Sbjct: 22  ETQVDEAFRSNSRERLPFAFAHRFGLVLAKDEQ-GVLGLYYTDKTPLAALLEVRRYAGEA 80

Query: 62  FQLIELSQAEFESKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDA 121
             L  L  + FE++LTQ YQ +SSEA+QLMEDIG + D  F+LAEELPQ EDLLE +DDA
Sbjct: 81  VPLQRLEASAFEARLTQAYQANSSEAQQLMEDIGNEMD-LFTLAEELPQTEDLLEGDDDA 139

Query: 122 PIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKV 181
           PII+LINA+L EAIKE ASDIHIET+EK L +RFRVDGVL+EVL P+RKLSSLLVSR+KV
Sbjct: 140 PIIRLINALLSEAIKEEASDIHIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSRIKV 199

Query: 182 MAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGM 241
           MA+LDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVV+RLLDKNA  LDL  LGM
Sbjct: 200 MARLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLAQLGM 259

Query: 242 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG 301
           T    + F  LI++PHGI+LVTGPTGSGKSTTLYAGL E+NS + NILTVEDPIE++++G
Sbjct: 260 TETIREQFDELIRKPHGILLVTGPTGSGKSTTLYAGLTEINSRDTNILTVEDPIEYELEG 319

Query: 302 IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 361
           IGQTQVN +VDMTFARGLRAILRQDPDVVM+GEIRDLETAQIAVQASLTGHLV+STLHTN
Sbjct: 320 IGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTN 379

Query: 362 TAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEP 421
           TA GA+TRL+DMG+EPFL+SSSLLGVLAQRLVRTLCP CK P+  D+ +R+L      + 
Sbjct: 380 TASGAITRLQDMGVEPFLVSSSLLGVLAQRLVRTLCPSCKAPHVPDERERELLGIGGGD- 438

Query: 422 LILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDD 481
            ++YRATGC  C H GYRGRTGIHELLLVDD ++ELIH   GE A+EK+IR + PSIR D
Sbjct: 439 AVIYRATGCKACGHNGYRGRTGIHELLLVDDTVRELIHGGRGELAIEKYIRQSVPSIRHD 498

Query: 482 GLDKVRQGITSLEEVMRVTKE 502
           G+ KV  GIT+LEEV+RVT+E
Sbjct: 499 GMQKVLAGITTLEEVLRVTRE 519