Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella loihica PV-4

 Score =  358 bits (919), Expect = e-103
 Identities = 194/440 (44%), Positives = 286/440 (65%), Gaps = 17/440 (3%)

Query: 73  ESKLTQVYQRDSSEARQLMEDIGADSDDFFSLA---EELPQNEDLLESEDDAPIIKLINA 129
           + KLT   ++   E    ++  G D D    +     +  Q E   ++ DDAPI+  IN 
Sbjct: 133 DDKLTVALEKVLEEDISALDLDGIDEDSLSGIEITDTDKRQEEQQGDASDDAPIVIYINK 192

Query: 130 MLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAE 189
           +L +AI++GASD+H E +EK   IRFR+DG+L EV  P   LS  + +R+KVM+KLDIAE
Sbjct: 193 ILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPVNLSGRISARLKVMSKLDIAE 252

Query: 190 KRVPQDGRISLRIGG-RAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDN 248
           +RVPQDGRI +++   +++D RVST+P+  GE++VMR+LD ++ +L +  LG        
Sbjct: 253 RRVPQDGRIKMKLSRTKSIDFRVSTLPTIWGEKIVMRILDSSSAQLGIEKLGYENDQRKL 312

Query: 249 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 308
           +  ++ +P G+ILVTGPTGSGK+ +LY GL  LN+ ERNI T EDP+E +++G+ Q  +N
Sbjct: 313 YEEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHIN 372

Query: 309 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT 368
            +  +TFA  LR+ LRQDPDVVMVGEIRDLETA+IA++A+ TGHLV+STLHTN+A   +T
Sbjct: 373 LKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLT 432

Query: 369 RLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEA-DKEQRKL--FDSKKKEPLILY 425
           RL +MG+  + I+SS+  ++AQRL R LC +C++P E  + E  KL    ++  E   +Y
Sbjct: 433 RLINMGVPGYNIASSVNLIIAQRLARRLCTECRQPEEVPEHELLKLGFTQAQIDEGFTVY 492

Query: 426 RATGCPKCNHKGYRGRTGIHELLLVDDALQELIHS-----EAGEQAMEKHIRATTPSIRD 480
           +  GC  C+  GY+GR GI+E++ + D +   I       +   QA E+ +R     +R+
Sbjct: 493 KPVGCDLCS-GGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIATQAKEQGMR----DLRE 547

Query: 481 DGLDKVRQGITSLEEVMRVT 500
            GL KV  G+TS+ E+ RVT
Sbjct: 548 SGLRKVIAGVTSIAEINRVT 567