Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella loihica PV-4

 Score =  343 bits (880), Expect = 1e-98
 Identities = 201/503 (39%), Positives = 302/503 (60%), Gaps = 22/503 (4%)

Query: 12  QSIRRLPFSFANRFK-LVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELSQA 70
           Q +  LP   A R++ L ++ N D    ++   A L     +E     K A ++  +++ 
Sbjct: 76  QVVNLLPEVQARRYRALAVEDNGDHVLVAMSDPADLQAMDNIEVLLAPK-AIKIAVVTET 134

Query: 71  EFESKLTQVYQRDSSEAR---QLMEDIGADSD-DFFSLAEELPQNEDLLESEDDAPIIKL 126
           +       +Y+R    A+   +L E+  AD   D  SL +         +S+++  ++KL
Sbjct: 135 QLLEAFDNLYRRTGEIAQIAGKLEEEYAADDQFDLASLTDA--------DSDNETTVVKL 186

Query: 127 INAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLD 186
           + ++  +A++  ASDIHIE  +K L IR R+DG L+E       ++S LV R+K+MA LD
Sbjct: 187 LQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLQENTLQEVNIASALVLRLKLMAGLD 246

Query: 187 IAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNH 246
           I+EKR+PQDGR  + I G  +DVR+STMP  HGE VVMRLLD++A  L L   GM A   
Sbjct: 247 ISEKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLDETGMPAEML 306

Query: 247 DNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQ 306
              RR IKRPHG++LVTGPTGSGK+TTLY  L ELN+++R I+TVEDP+E+ +  I Q Q
Sbjct: 307 ARVRRQIKRPHGMLLVTGPTGSGKTTTLYGVLSELNTADRKIITVEDPVEYQLPRINQVQ 366

Query: 307 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGA 366
           VN ++ + F+  LR  LRQDPD++MVGE+RD ET +I ++ +LTGH V+STLHTN AV +
Sbjct: 367 VNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHFVLSTLHTNDAVTS 426

Query: 367 VTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLILYR 426
             RL DMG   +L++S+L  ++AQRLVR +C  C +PY+A         S         +
Sbjct: 427 ALRLLDMGAASYLVASALRVIIAQRLVRRVCHKCAQPYDASAADHAWLSSISGRDFSQAK 486

Query: 427 ---ATGCPKCNHKGYRGRTGIHELLLVDDALQELIHS---EAGEQAMEKHIRATTPSIRD 480
               TGC  CN  GYRGR G+ E+L +D+ + + + S   +A  QA  +    T   + +
Sbjct: 487 FRIGTGCQSCNGSGYRGRIGVFEILELDEKMIDAMRSGNPQAFAQAAYQSPNFT--PLAE 544

Query: 481 DGLDKVRQGITSLEEVMRVTKES 503
             L+ + +G+T++EEV ++ +++
Sbjct: 545 SALNYLAEGMTTMEEVAKLIEDA 567