Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., type IV-A pilus assembly ATPase PilB from Dechlorosoma suillum PS

 Score =  335 bits (858), Expect = 3e-96
 Identities = 191/483 (39%), Positives = 291/483 (60%), Gaps = 16/483 (3%)

Query: 28  VLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELSQAEFESKLTQVYQRDSSEA 87
           V+  N+  ++ S+    P ++ AL E +     A   + +     E KL  +  + S  A
Sbjct: 94  VIPLNKRGNRLSVAIADPTNLRALDEIRFQTGLAVDSVVVE----EPKLAPLVVKYSESA 149

Query: 88  RQLMEDIGADSDDFFSLAEELPQ---NEDLLESEDDAPIIKLINAMLGEAIKEGASDIHI 144
            + ++++  + D     AEE  Q   +E +    DDAP++K I  +L +AI +GASDIH 
Sbjct: 150 EENLKNL-TNEDLNLEFAEEEDQAKADEAVSLDVDDAPVVKFIQKILLDAINDGASDIHF 208

Query: 145 ETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGG 204
           E +EK   IR+R+DG LREV  P   +   + SR+KV++++DI+EKRVPQDGR+ L +  
Sbjct: 209 EPYEKFYRIRYRIDGELREVANPPLAIKEKVASRIKVISRMDISEKRVPQDGRMKLVLSK 268

Query: 205 -RAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVT 263
            RA+D RVST+P+ HGE++VMR+LD ++  L + +LG      +     I RP+G++LVT
Sbjct: 269 TRAIDFRVSTLPTLHGEKIVMRILDPSSATLGIEALGYEPEQKEALLNAIHRPYGMVLVT 328

Query: 264 GPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAIL 323
           GPTGSGK+ +LY  L  LN    NI T EDP E ++ GI Q  VN +  +TF+  L++ L
Sbjct: 329 GPTGSGKTVSLYTCLNILNKPGINISTAEDPAEINLAGINQVNVNDKAGLTFSAALKSFL 388

Query: 324 RQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSS 383
           RQDPD++MVGEIRDL+TA+IA++A+ TGH+V+STLHTN A   + RL++MG+  F I+SS
Sbjct: 389 RQDPDIIMVGEIRDLDTAEIAIKAAQTGHMVLSTLHTNDAPTTLERLKNMGVPTFNIASS 448

Query: 384 LLGVLAQRLVRTLCPDCKEPYEADKE---QRKLFDSKKKEPLILY--RATGCPKCNHKGY 438
           ++ + AQRL R LC +CK P     E        +++      LY     GC +C   G+
Sbjct: 449 VILITAQRLARRLC-NCKVPLHVPTETLLNAGFTEAELDGSWTLYGPNPEGCERCKGGGF 507

Query: 439 RGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRAT-TPSIRDDGLDKVRQGITSLEEVM 497
           +GR GI++++ V + +Q +I +      +    +      +R  GL KV+QG+TSL+EV+
Sbjct: 508 KGRVGIYQVMPVSEEIQRIIMANGNSMDIAAQAKKEGVKDLRQSGLLKVKQGVTSLDEVL 567

Query: 498 RVT 500
             T
Sbjct: 568 STT 570