Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV pilus biogenesis protein PilB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  359 bits (922), Expect = e-103
 Identities = 187/390 (47%), Positives = 268/390 (68%), Gaps = 6/390 (1%)

Query: 116 ESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLL 175
           ES DDAPI+  IN +L +AI++GASD+H E +EK   IRFR+DG+L EV  P   L+  L
Sbjct: 179 ESSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRL 238

Query: 176 VSRVKVMAKLDIAEKRVPQDGRISLRIGG-RAVDVRVSTMPSSHGERVVMRLLDKNATRL 234
            +R+KVM+KLDIAE+RVPQDGRI +++   +++D RVST+P+  GE++VMR+LD ++ +L
Sbjct: 239 SARLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQL 298

Query: 235 DLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 294
            +  LG        +  ++ +P G+ILVTGPTGSGK+ +LY GL  LN++ERNI T EDP
Sbjct: 299 GIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTAERNISTAEDP 358

Query: 295 IEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLV 354
           +E +++G+ Q  +N +  +TFA  LR+ LRQDPDVVMVGEIRDLETA+IA++A+ TGHLV
Sbjct: 359 VEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLV 418

Query: 355 MSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYE-ADKEQRKL 413
           +STLHTN+A   +TRL +MG+  + I+SS+  ++AQRL R LCP+CK+P +  D E ++L
Sbjct: 419 LSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCPECKQPEQIPDHELQRL 478

Query: 414 --FDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHI 471
              D +  +    Y+  GC  C+  GY+GR GI+E++ + D +   I        +    
Sbjct: 479 GFSDVQIAQGFTTYKPVGCEHCS-GGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAGQA 537

Query: 472 RAT-TPSIRDDGLDKVRQGITSLEEVMRVT 500
           +A     +R  GL KV QG+TS+ EV RVT
Sbjct: 538 KAQGMRDLRQSGLLKVLQGVTSIAEVNRVT 567