Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella sp. ANA-3

 Score =  339 bits (869), Expect = 2e-97
 Identities = 181/421 (42%), Positives = 272/421 (64%), Gaps = 13/421 (3%)

Query: 87  ARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIET 146
           A +L E+  AD    F LA          +S+++  ++KL+ ++  +A++  ASDIHIE 
Sbjct: 154 AGKLEEEYAADQ--MFDLASLTSS-----DSDNETTVVKLLQSIFEDAVQMRASDIHIEP 206

Query: 147 FEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRA 206
            EK L IR R+DG L E +     +++ LV R+K+MA LDI+EKR+PQDGR  + I G  
Sbjct: 207 GEKALRIRQRIDGQLHETILNEVNIAAALVLRLKLMAGLDISEKRLPQDGRFHMEIKGHK 266

Query: 207 VDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPT 266
           +DVR+STMP  HGE VVMRLLD++A  L L+  GM  H     R+ IKRPHG++LVTGPT
Sbjct: 267 IDVRMSTMPIYHGESVVMRLLDQSAGLLTLNETGMPPHILARIRKQIKRPHGMLLVTGPT 326

Query: 267 GSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQD 326
           GSGK+TTLY  L ELN+++R I+TVEDP+E+ +  I Q QVN ++ + F+  LR  LRQD
Sbjct: 327 GSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRINQVQVNHKIGLDFSNVLRTTLRQD 386

Query: 327 PDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLG 386
           PD++MVGE+RD ET +I ++ +LTGH V+STLHTN AV +  RL DMG   +L++S+L  
Sbjct: 387 PDIIMVGEMRDQETVEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRV 446

Query: 387 VLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLILYR---ATGCPKCNHKGYRGRTG 443
           ++AQRLVR +C +C   Y+   +++   +S  ++     +    TGC  CN  GYRGR G
Sbjct: 447 IIAQRLVRRVCHNCGVEYQPTAQEKAWLNSVSRQDFSSAKFRIGTGCQSCNGSGYRGRIG 506

Query: 444 IHELLLVDDALQELIHSEAGEQAMEKHIRAT--TPSIRDDGLDKVRQGITSLEEVMRVTK 501
           I E+L +D+ + + + +   +      +++   TP + +  L  + +G+T++EEV ++ +
Sbjct: 507 IFEILELDEKMIDAMRTGNPQDFARAALQSPNFTP-LAESALQYLSEGMTTIEEVAKLVE 565

Query: 502 E 502
           +
Sbjct: 566 D 566