Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella sp. ANA-3

 Score =  353 bits (905), Expect = e-101
 Identities = 184/400 (46%), Positives = 271/400 (67%), Gaps = 14/400 (3%)

Query: 110 QNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSR 169
           Q E+  E+ DDAPI+  IN +L +AI++GASD+H E +EK   IRFR+DG+L EV  P  
Sbjct: 173 QEENAGEASDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPI 232

Query: 170 KLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGG-RAVDVRVSTMPSSHGERVVMRLLD 228
            L+  L +R+KVM+KLDIAE+RVPQDGRI +++   +++D RVST+P+  GE++VMR+LD
Sbjct: 233 SLAGRLSARLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILD 292

Query: 229 KNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 288
            ++ +L +  LG        +  ++ +P G+ILVTGPTGSGK+ +LY GL  LN++ERNI
Sbjct: 293 SSSAQLGIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTAERNI 352

Query: 289 LTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS 348
            T EDP+E +++G+ Q  +N +  +TFA  LR+ LRQDPDVVMVGEIRDLETA+IA++A+
Sbjct: 353 STAEDPVEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAA 412

Query: 349 LTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPY---E 405
            TGHLV+STLHTN+A   +TRL +MG+  + I+SS+  ++AQRL R LC +CK+     E
Sbjct: 413 QTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCTECKQAEQIPE 472

Query: 406 ADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHS----- 460
            + ++    D +  +    ++  GC  C+  GY+GR GI+E++ + D +   I       
Sbjct: 473 HELQRLGFTDEQIAQGFTTFKPVGCEHCS-GGYKGRVGIYEVMKMSDEIARTIMEGGNSL 531

Query: 461 EAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRVT 500
           +  +QA  + +R     +R  GL KV QG+TS+ E+ RVT
Sbjct: 532 QIADQAKAQGMR----DLRQSGLLKVLQGVTSIAEINRVT 567