Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., General secretion pathway protein F from Pseudomonas fluorescens FW300-N2E2

 Score =  288 bits (736), Expect = 3e-82
 Identities = 167/405 (41%), Positives = 236/405 (58%), Gaps = 4/405 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEV-VETQVKAARSRSQGFAF 59
           M  + ++A DA+G+ + G +E D+       L+ + L  ++V VE     A     G  F
Sbjct: 1   MNRYRFEAADAQGKIESGHLEADSQGAAFNLLRSRGLTALQVQVERNTTPANG---GGLF 57

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
              +S  DLA  TRQLA+L+ + +PLE  L A  EQ+E+  I   L AVRA V  G  L+
Sbjct: 58  SAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLA 117

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           ++L   P  F E++R+++AAGE+SG L  V+ERLADY E R  +R K+  A IYP V+ +
Sbjct: 118 EALAARPRDFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239
            ++ IV FLL+ VVP++V  F Q  Q LPA T  +L ASDF++ WG      L    +  
Sbjct: 178 VSIAIVIFLLSYVVPQVVSAFSQARQDLPALTVAMLTASDFIRAWGWLCFGVLAGGFWSW 237

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R  L KP  RL W  RV+ LP+IG+   GLNTARFA TL+I   + +P+L  +  A   +
Sbjct: 238 RMYLRKPAARLSWHARVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQTL 297

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
           +N  + Q V  A   VREG +L  AL   K+FPP+++H+IASGE++G L  ML RAA   
Sbjct: 298 SNDRLSQSVSEATAKVREGVNLAAALRVEKVFPPVLIHLIASGEKTGCLPPMLERAAQTL 357

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
               E        +  P +I +M G+VL IVMA L+PI+E+N L+
Sbjct: 358 SRDIERRAMGMTALLEPLMIVVMGGVVLVIVMAVLLPIIEINQLV 402