Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type IV fimbrial assembly protein PilC from Pseudomonas fluorescens FW300-N2E2

 Score =  197 bits (501), Expect = 5e-55
 Identities = 114/401 (28%), Positives = 216/401 (53%), Gaps = 10/401 (2%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQG-FAFKRG 62
           + ++  D KG    G + G +   V+ +L++Q + P +V        R +S   F+  + 
Sbjct: 11  YTWEGKDRKGTKMSGELTGQSPALVKAQLRKQGINPQKV--------RKKSTSIFSKGKR 62

Query: 63  ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSL 122
           I   D+AL TRQ+AT++++G+PL +    + E  + P +R ++  V+ +V  G + + +L
Sbjct: 63  IKPLDIALFTRQMATMLKAGVPLLQAFDIIGEGFDNPSMRKLVDEVKQEVAAGNSFAAAL 122

Query: 123 GDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAV 182
              P  FDEL+ ++V AGE++G LD++L+R+A Y E  + +++K+++AM YP  +V+ A 
Sbjct: 123 RKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTYPAAVVLVAA 182

Query: 183 GIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWL 242
            +   LL  VVP+    F   G  LPA T  ++  S+ +Q W   +L GL+   + V++ 
Sbjct: 183 VVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEIMQQWWWVMLGGLMGAFFGVKYA 242

Query: 243 LTKPDIRLRW-DRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301
           L + +    W D+ ++ LP+IG +      AR+ARTLS   ++ +P+++ +        N
Sbjct: 243 LRRSERFRDWRDKWLLKLPLIGTLLYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGN 302

Query: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDN 361
              K  V    + V  G  L  ++  + +FP + + M A GE+SG L+ ML + A   + 
Sbjct: 303 VVFKHAVQRIKQEVSTGMQLNFSMRASGIFPNLAVQMTAIGEESGALDDMLDKVASFYEA 362

Query: 362 SFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNN 402
             ++ V+    +  P ++ ++  +V  +V+A  +PI ++ +
Sbjct: 363 EVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQLGS 403