Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein GspF from Pseudomonas fluorescens FW300-N2C3

 Score =  347 bits (890), Expect = e-100
 Identities = 185/405 (45%), Positives = 270/405 (66%), Gaps = 3/405 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  F+Y+A + +GR  KG +E D+ R  RQ L+E+ L+P E+   Q K  R      A  
Sbjct: 1   MPTFDYRAENPQGRRCKGRVEADSPRHARQLLRERGLLPSELA--QAKDQRVLGGRHAGG 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +   DLAL+T QL+TL+Q+G+PLEE L AVA+QS+K R+  +L AVR++V EG+ L+ 
Sbjct: 59  R-LGPADLALLTLQLSTLIQAGLPLEESLGAVAQQSQKRRVAHLLAAVRSRVMEGHALAT 117

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +P  F ELF + VAAGE+SGHL  VLE+LA Y + RQ  R ++Q A++YP++L++ 
Sbjct: 118 ALRAFPQAFPELFCATVAAGEQSGHLGQVLEQLASYTQARQASRQRIQLALVYPLILMLA 177

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
            V IVAFLL  VVP +V  F+  GQ LP  TQ L+  SD L+  G+ LL  L  L  L R
Sbjct: 178 CVAIVAFLLGYVVPDVVKIFIDSGQPLPWLTQALIAVSDGLRRHGLVLLGALAGLFGLWR 237

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           W L +P  RLRW R ++ LP++G++ R +  ARFA TL+I + SA+P+++ + +A  V+ 
Sbjct: 238 WSLRQPAWRLRWHRLLLRLPLLGEVLRAMEAARFASTLAILSKSAVPLVEALHIAAQVIG 297

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N  ++ ++   A +VREG +L + LEQ    PP+MLHMIASGE++GEL+ ML RAA+ Q+
Sbjct: 298 NLTIRARMADVARSVREGGTLTRGLEQGGDIPPLMLHMIASGERAGELDNMLARAAEQQE 357

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
            S  + + + + +F PA++ LM G+VL IVMA L+PIL +N L++
Sbjct: 358 ASLAARIALVVSLFEPAMLVLMGGVVLLIVMAILLPILSLNQLVN 402