Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., general secretion pathway protein F from Pseudomonas stutzeri RCH2

 Score =  398 bits (1022), Expect = e-115
 Identities = 201/404 (49%), Positives = 291/404 (72%), Gaps = 1/404 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MAAFEY ALD +GR +KG+IE D+ RQ RQ L+E+   P+EV + + K   SR  GF+F 
Sbjct: 1   MAAFEYLALDPRGREQKGLIEADSPRQARQLLREKQWAPLEVKQAKSKEDVSRG-GFSFG 59

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           RG+S  DLAL+TRQLATLVQ+ +P+EE LRA A QS   +I++ML+AVRA+V EG++L+ 
Sbjct: 60  RGLSARDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAA 119

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L +YP  F EL+R+ VAAGE +GHL  VL++LADY + RQ+ R K+Q A++YPV+L+V 
Sbjct: 120 ALREYPSAFPELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVA 179

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           ++ IV  LL  VVP +V  FV  GQ LPA T+ L+  SD +++WG  +++G++  +  +R
Sbjct: 180 SLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWLIVLGIIAGVLAMR 239

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
             L  P +RLRW   ++ +P+IG+++R  NTARFA TL+I T S +P+++ + +A  V+ 
Sbjct: 240 AALRDPALRLRWHAFILRIPLIGRLSRATNTARFASTLAILTKSGVPLVEALSIAAAVIA 299

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N  ++++V+ AA+ VREGSSL +AL+ T  FPPMMLHMIASGE+SGEL+ ML R A NQ+
Sbjct: 300 NLRIRERVVEAAQKVREGSSLTRALDATGEFPPMMLHMIASGEKSGELDQMLARTARNQE 359

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           N   + V++ +G+F P ++  M  +VL IV+A LMPIL +N L+
Sbjct: 360 NDLAAQVSLLVGLFEPFMLVFMGAVVLVIVLAILMPILSLNQLV 403