Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type II secretory pathway, component PulF from Pseudomonas stutzeri RCH2

 Score =  196 bits (498), Expect = 1e-54
 Identities = 112/404 (27%), Positives = 219/404 (54%), Gaps = 8/404 (1%)

Query: 2   AAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKR 61
           + F ++  + +G   KG + G +   V+ +L++Q + P +V +  V         F   +
Sbjct: 9   SVFTWEGTNRQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSL-------FGAGK 61

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            I   D+AL TRQ+AT++++G+PL +    + E  + P +R ++  ++ +V  G + + +
Sbjct: 62  KIKPMDIALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATA 121

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
           L   P  FD+L+ ++V +GE+SG L+++L+R+A Y E  + +++K+++AM YP+ +V+ A
Sbjct: 122 LRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLVA 181

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRW 241
           + + A LL  VVP+    F   G  LPA T  ++  S+ LQ W   +L  +  + Y  + 
Sbjct: 182 IIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHVVLFVMFGVAYAFKT 241

Query: 242 LLTKPD-IRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
              K +  R  +DR ++ +PV+G I      ARFARTL+   ++ +P++D +        
Sbjct: 242 AHGKSERFRNGFDRFLLRIPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATG 301

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N   +   +    +V  G  L  ++  T  FP M + M A GE+SG L+ ML + A   +
Sbjct: 302 NVVFRNATMKVKSDVSSGMQLNFSMRTTGTFPTMAVQMTAIGEESGALDEMLGKVATFYE 361

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +  ++ V+    +  P ++A++  +V  +++A  +PI ++ +++
Sbjct: 362 DEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQLGSVV 405