Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  236 bits (602), Expect = 9e-67
 Identities = 140/402 (34%), Positives = 229/402 (56%), Gaps = 4/402 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M+ F+Y+ALDA+G  + G +E  +       L+++ L+ ++V    +   R R+ G    
Sbjct: 1   MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLR-RALGSGLL 59

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
            G +   L   T+QLATL+ +G PLE  L  + +Q  +P+ + ++  +R +V  G  LS 
Sbjct: 60  NGAA---LVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSV 116

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L +    F  L+ SMV AGE  G L+S L +L+DY E  Q +R ++  A+IYP  LVV 
Sbjct: 117 ALEEEGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVVG 176

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
            +G +A LLA VVP+ V  F  +G  +P  T+ +L+  +FL  +G+++L GL+ LI+ + 
Sbjct: 177 VLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMA 236

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
             +  P  R R DRR++ + VIG + + +  AR  RTL    ++ + +L  + +A  V T
Sbjct: 237 IRMRDPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCT 296

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N+ ++ QV  AAE+V+ G +L  A     L P + L MI  GEQ+GEL+ ML + AD  D
Sbjct: 297 NRALQAQVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFD 356

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNN 402
              +  ++  L    PAL  +MAGMV  I++A ++P++ + +
Sbjct: 357 VEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTS 398