Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., fimbrial assembly protein PilC-like from Synechococcus elongatus PCC 7942

 Score =  216 bits (551), Expect = 7e-61
 Identities = 127/406 (31%), Positives = 215/406 (52%), Gaps = 8/406 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  +  +  D++G  +K  I+  N R+ R  L++Q  +   + E+   +    S  F  +
Sbjct: 1   MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSS-FNLE 59

Query: 61  RG---ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
                ++  D+AL +RQL++LV +G+P+   L  + EQ+  P++R  L  +   V EG  
Sbjct: 60  EATSKVTVKDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLN 119

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           LSDS+  +P VFD L+ +M+ AGE  G LD VL RL+   E+  ++R++++ AM YP+ +
Sbjct: 120 LSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAV 179

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQ---HWGISLLVGLLM 234
            V A+ +   +   ++P   G F   G  LP  T  LL  S  L+    WG   L+ L  
Sbjct: 180 FVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGF-FLIFLFG 238

Query: 235 LIYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRV 294
            I++ +   + P  RL  D  V+ LPV+G++ +   TARF RT    T + +PI+  + +
Sbjct: 239 SIFVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEI 298

Query: 295 AVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTR 354
             D   NQ + + + AA   V+ G  +  AL + ++FP M L MI  GE++GEL+ M+ +
Sbjct: 299 VRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNK 358

Query: 355 AADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400
            AD  ++  E  V     +  P +I L+ G+V  I++A  +P+  +
Sbjct: 359 VADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLPMFSI 404