Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., MSHA biogenesis protein MshG (RefSeq) from Shewanella amazonensis SB2B

 Score =  203 bits (516), Expect = 8e-57
 Identities = 106/405 (26%), Positives = 218/405 (53%), Gaps = 3/405 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  ++Y+  +A+G+   G ++  +      +L  ++++P+E  ET+ +     S    F+
Sbjct: 1   MPVYKYRGRNAQGQQVTGELDAASENAAADQLLSRAVIPLEFRETKPRG-EGVSVSSLFR 59

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +S  +L + TRQ+ +L +SG+P+   +  ++E +   +++  L  +  ++T G  LS 
Sbjct: 60  RRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLSS 119

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++  +P VFD LF SMV  GE +G L+ V  +L+ Y E  Q+ R +++ A+ YP  +++ 
Sbjct: 120 AMNHHPEVFDALFVSMVHVGENTGKLEDVFLQLSGYLEREQETRRRIKSAVRYPTFVLIA 179

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASD-FLQHWGISLLVGLLMLIYLV 239
               +  L   V+PK    F + G  LP +T+ L+  S+ F+ +W +  L+ + ++  L 
Sbjct: 180 ISLAMVILNIMVIPKFADMFSRFGAELPWATRILIATSNFFVNYWWLLALLVVGLIGGLA 239

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
            W  T+   + +WD+  + +P +G I      +R+ R+ ++   + +P+   + +  D +
Sbjct: 240 YWHKTEQGEK-KWDQWKLHMPAVGSIIERSTLSRYCRSFAMMMGAGVPMTQALSLVADAV 298

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N ++  +++A    +  G S+ +    +KLF P++L M+A GE++G+LE +L  AAD  
Sbjct: 299 DNAYMHDKIVAMRRGIESGESMLRVSNHSKLFTPLVLQMVAVGEETGQLEQLLNDAADFY 358

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  +        P LI ++AG+VL + +   +P+ +M N++
Sbjct: 359 EGEVDYDLKNLTAKLEPILIGIVAGIVLILALGIYLPMWDMLNVV 403