Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., type IV pilus biogenesis protein PilC (RefSeq) from Shewanella amazonensis SB2B

 Score =  230 bits (587), Expect = 5e-65
 Identities = 129/404 (31%), Positives = 220/404 (54%), Gaps = 11/404 (2%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGF--AFKR 61
           FE+K L+  G+   G + G +  +++  LK Q + P        K  R +S G   A  +
Sbjct: 23  FEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINP--------KVVRKKSDGLFGASNK 74

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            I+  D+A++TRQ+AT++ +G+PL   +  + +  EKP++R +L  +   +  G  LSD+
Sbjct: 75  KINAMDIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDA 134

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
           L  +   FD+L+  +VAAGE SG LD+V +R+A Y E  + ++SK+++AM YP  +VV A
Sbjct: 135 LRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYPAAVVVVA 194

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL-VR 240
           + +   LL  VVP+    F   G  LPA TQ +++ S FLQ      L  ++  I+L VR
Sbjct: 195 IAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFFLTAIVGSIWLYVR 254

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
                  +R R D  V+ +PVIG+I      ARFARTL+   ++ +P++DG+  A     
Sbjct: 255 AHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASG 314

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N   ++ +L     V  G  +  A+    LFP M++ M+  GE+SG L+ ML + A+  +
Sbjct: 315 NAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYE 374

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
              +  V+    +  P ++ ++  +V  +++   +PI +M N++
Sbjct: 375 MQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNVV 418