Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (RefSeq) from Shewanella amazonensis SB2B

 Score =  464 bits (1193), Expect = e-135
 Identities = 230/405 (56%), Positives = 320/405 (79%), Gaps = 1/405 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFA-F 59
           M AFEYKALD KG+ +KGVIE D+AR  R +L++  L+P+E+     K  +++S GF+ F
Sbjct: 1   MPAFEYKALDGKGKQQKGVIEADSARHARSQLRDMRLMPLEIEPVVEKETKAKSVGFSPF 60

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
           KRGIS  +LALITRQ+ATLV SG+P+EE L+AV +Q EK R+ +M++AVR++V EGY+L+
Sbjct: 61  KRGISVAELALITRQIATLVASGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA 120

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           DS+ ++PH+FD+L+RSMVA+GEKSGHL+ VL RLADY E RQ+++SKL QAMIYPV+L +
Sbjct: 121 DSMAEFPHIFDDLYRSMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVMLTL 180

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239
            A+G+VA LLAAVVPK+V QF  +GQ LPA+T+ L+ +S F+Q +G+ ++V +++   + 
Sbjct: 181 VAIGVVAVLLAAVVPKVVSQFEHLGQELPATTKALMASSAFVQDYGLLIMVLVVVAFVVF 240

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           + LL   + ++++ + ++ LPV+G+++R +NTARFARTLSI ++SA+P+LDGMR+A +VM
Sbjct: 241 QRLLANDNFKMKYHQFLLRLPVVGRVSRSINTARFARTLSILSASAVPLLDGMRIAGEVM 300

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N  V++ V  A   VREG+SL  AL  TKLFPPMML+MIASGE+SG+LE ML RAADNQ
Sbjct: 301 QNLRVREAVEEATARVREGTSLGAALTNTKLFPPMMLYMIASGEKSGQLENMLERAADNQ 360

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           D  FE+ VN+ALG+F PAL+  MA +VLFIV+A L PILEMNNL+
Sbjct: 361 DREFEANVNLALGVFQPALVISMAAVVLFIVLAILQPILEMNNLI 405