Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., type II secretion system protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  146 bits (368), Expect = 1e-39
 Identities = 108/414 (26%), Positives = 196/414 (47%), Gaps = 25/414 (6%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQ----- 55
           M  + Y+A++A+GR  +G +E +    +++ L    L         + AAR  S+     
Sbjct: 1   MTLYAYRAVNARGRVVRGRLEAEGEGALQRGLLGAGL--------HLLAARPASRPDRRG 52

Query: 56  ------GFAFKRG-ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAV 108
                 G   +RG I+  +L  +   L   + +G+PL E L  + E +   R+R +L  V
Sbjct: 53  PLAWIGGLVGRRGAIAERELQQLFLHLDRALGAGVPLLEALDDIGEVTGDGRLRMILRRV 112

Query: 109 RAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQ 168
           R  +++G  LSD+LG +      +   +V AGE+SG L      L  +   R+ +  +L+
Sbjct: 113 RGDLSQGLALSDALGRHERALGPMVAPVVRAGEESGDLGGAFGPLVAHLRWREDLGRRLR 172

Query: 169 QAMIYPVVLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISL 228
           +A  YP+V++     +  FL+A VVP +      +G+ LP  T+ L+  S  +     +L
Sbjct: 173 KATRYPLVVLGAIALLFVFLMAVVVPDLASFLGGLGEGLPPQTRALIGLSGLIVDHAFAL 232

Query: 229 LVGLLMLIYLVRWLLTK---PDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSA 285
             G L L  L+   L +    +   R D  +++LP+ G + R +  +RF    ++   + 
Sbjct: 233 --GFLALAGLLAPGLARRMSDEAAYRLDAWILALPLGGPLIRRIALSRFCHFFALMVGAG 290

Query: 286 IPILDGMRVAVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQS 345
           +P+   +  A  V+ N+ + + +  A   V  G  L  AL  +  FPP++  M+  GE  
Sbjct: 291 VPLAVCLATARGVLGNRCLAEALDTATAAVTAGHPLSDALRLSGQFPPLVTRMVRIGEDG 350

Query: 346 GELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILE 399
           G+L G L   +   D       +  +G+  PAL+ +  G++ +IV A L+P+ +
Sbjct: 351 GDLAGALGHVSAFHDGDVAEATDRLIGLLEPALLLVAGGLLGWIVWAVLLPVYD 404