Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Rahnella sp. WP5

 Score =  338 bits (866), Expect = 2e-97
 Identities = 174/407 (42%), Positives = 270/407 (66%), Gaps = 4/407 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M+ F + A+   G+ ++GVI+ D+ R  RQ ++E+ L  +E+ +         S+    K
Sbjct: 1   MSRFAFHAITPTGKTQRGVIDADSLRLARQIVRERGLTLLEIKQVGNSLTTLNSKNKGLK 60

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             + +  ++L +RQLATL  + +P+E  L  +A Q+E   +  +L AVR KV EG+TL+D
Sbjct: 61  TRVPSHAISLFSRQLATLTNAALPVEAALAVIARQTEHAGLTQVLTAVRNKVVEGHTLAD 120

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L D+P +FD +FR++V AGE++G L +VLE++ADY E RQ+++SKL QAMIYP +L + 
Sbjct: 121 ALSDFPRLFDPMFRTLVTAGERTGQLGTVLEKMADYYEIRQQIKSKLSQAMIYPAMLTII 180

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQH--WGISLLVGLLMLIYL 238
           A+ ++  LL AVVP+I+ QFV M   LP ST+ L+  S FL+   W I+++V  +  I  
Sbjct: 181 AILVIVILLVAVVPQIIEQFVHMKHTLPISTRILIGVSGFLERTWWVIAIVV--IAFIAT 238

Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298
            R  L +    +R+   ++ + V+G + R +N+AR+ARTLSI  SS +P+LD M+++ + 
Sbjct: 239 FRLALRRKHNLMRFHTALLGVVVLGPLIRAINSARYARTLSILQSSGVPLLDAMKISTEG 298

Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358
           +TN+ +   +  AAE+VR+GSSL   LEQT+LFPPMML+MIASGEQSG L  ++  AADN
Sbjct: 299 ITNRRIHYLLTQAAEHVRQGSSLFAVLEQTRLFPPMMLYMIASGEQSGRLGELMAHAADN 358

Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           QD   +  +++ L +F P LI  MA +VLFI+M+ L PIL++NN++S
Sbjct: 359 QDKLMQHRLSMVLALFEPLLIVTMASIVLFIIMSILQPILQLNNMVS 405