Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25-INTG

 Score =  281 bits (719), Expect = 2e-80
 Identities = 164/405 (40%), Positives = 234/405 (57%), Gaps = 5/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEV-VETQVKAARSRSQGFAF 59
           M  + ++A DA G+ + G +E D+ R     L+ + L  + V +ET V A      G  F
Sbjct: 1   MNRYRFEAADATGKLESGHLEADSQRAAFGVLRSRGLTALSVQLETPVPAGG----GALF 56

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
               S  DLA  TRQLA+L+ + +PLE  L A  EQ+EK  I   L AVRA V  G  L+
Sbjct: 57  SAKFSDNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLA 116

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           ++L   P  F  ++R+++AAGE+SG L  V+ERLADY E R  +RSK+  A IYP V+ +
Sbjct: 117 EALATRPRDFPAIYRALIAAGEESGDLAQVMERLADYIEERNNLRSKILTAFIYPGVVGL 176

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239
            ++ IV FLL+ VVP++V  F Q  Q LP  T  +L+ASDF++ WG+     +    +  
Sbjct: 177 VSIAIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGVWCFGLMAAGFWGW 236

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R  L  P  RL W  RV+ LP+IG+   GLNTARFA TL+I  ++ +P+L  +  A   +
Sbjct: 237 RLYLRNPVARLNWHSRVLRLPLIGRFVLGLNTARFASTLAILGAAGVPLLRALEAARQTL 296

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
           +N  +   V  A   VREG +L  AL    +FPP+++H+IASGE++G L  ML RAA   
Sbjct: 297 SNDRLSLSVSDATAKVREGVNLAPALRVENVFPPVLIHLIASGEKTGSLPPMLERAAQTL 356

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
               E        +  P +I +M  +VL IVMA L+PI+E+N L+
Sbjct: 357 SRDIERRAMGMTALLEPLMIVVMGAVVLVIVMAVLLPIIEINQLV 401