Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  464 bits (1194), Expect = e-135
 Identities = 225/405 (55%), Positives = 318/405 (78%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M AFEYKAL+A+G+ +KGV+E D AR  R +L+E  L+P+E+     K A+++S GF+FK
Sbjct: 1   MPAFEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSFK 60

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           RGIS  +LALITRQ+ATLV +G+P+EE L+AV +Q EK R+ +M++AVR++V EGY+L+D
Sbjct: 61  RGISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLAD 120

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           S+ ++PH+FD+L+R+MVA+GEKSGHL+ VL RLADY E RQ++++K+ QAMIYP+VL + 
Sbjct: 121 SMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTLV 180

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A+ ++A LLAAVVP++VGQF  MGQ LP +TQFL+ +SDF++ +G+ ++  ++ L+   +
Sbjct: 181 AISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGAK 240

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
            LL     R+++D  ++ +PV+G++++GLNTARFARTLSI T+S++P+LD MR+A +V+ 
Sbjct: 241 QLLRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEVLM 300

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N  V+  V  A   VREG+SL  AL  TKLFPPMML+MI SGE+SG+LE ML RAADNQD
Sbjct: 301 NVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQD 360

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
             FES VNIALG+F P L+  MA +VLFIV+A L PILE+NN++S
Sbjct: 361 REFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNMIS 405