Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  222 bits (565), Expect = 2e-62
 Identities = 123/405 (30%), Positives = 216/405 (53%), Gaps = 8/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           +  FE+K  +  G+   G + G +  +++ +LK Q + P  V +      +S  +     
Sbjct: 23  VVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLFKSDPK----- 77

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             I   D+A+ITRQ+AT++ +G+P+   L  +    EKPR+R +L  + A V  G  LSD
Sbjct: 78  --IKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSD 135

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           SL  +   FD+L+  +V AGE SG LD+V +R+A Y E  + ++SK+++AM YP  ++V 
Sbjct: 136 SLKPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVV 195

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A+ +   LL  VVP+    F   G  LPA TQ ++  S +LQ      ++G+++ I+  +
Sbjct: 196 AIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWSFK 255

Query: 241 WL-LTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
              L     R + D  V+ +P+IG+I      ARFARTL+   ++ +P++DG+  A    
Sbjct: 256 KAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGAS 315

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N   +  +      V  G  +  A+  T LFP M++ M+  GE+SG L+ ML + A+  
Sbjct: 316 GNYVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIY 375

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  V+    +  P ++ ++  +V  +++   +PI +M N++
Sbjct: 376 EMQVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNVV 420