Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (535), Expect = 5e-59
 Identities = 109/404 (26%), Positives = 213/404 (52%), Gaps = 2/404 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  ++YK  DA+G    G ++         +L  ++++P+E+VE +V  AR    G  FK
Sbjct: 1   MPIYQYKGRDAQGNAVSGRLDATTQSAAADQLLSRAVIPLELVEAKV--AREFHLGSLFK 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             +   +L + TRQ+ +L +SG+P+   +  ++E S   R++  L  +  ++  G  LS 
Sbjct: 59  SKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSS 118

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++  +P VFD LF SM+  GE +G L+    +L+ Y E  Q+ R +++ AM YP+ +++ 
Sbjct: 119 AMNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMA 178

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
               +  L   V+PK    F + G  LP +T+ L+  S+F  ++   LL+ L+     +R
Sbjct: 179 VALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIALVGCFVGIR 238

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           +         +WDR  + +P +G I      +R+ R+ S+  S+ +P+   + +  D + 
Sbjct: 239 YWHNTEKGEQQWDRWKLKIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVD 298

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N ++  +++A    +  G S+ +   Q++LF P++L M+A GE++G+++ +L  AAD  +
Sbjct: 299 NAYMHDRIVAMRRGIESGESMLRVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYE 358

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
              +  +        P LI ++A +VL + +   +P+ +M N++
Sbjct: 359 GEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDMLNVV 402