Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., type II secretion system protein from Marinobacter adhaerens HP15

 Score =  192 bits (489), Expect = 1e-53
 Identities = 109/400 (27%), Positives = 202/400 (50%), Gaps = 4/400 (1%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQ-VKAARSRSQGFA-FKR 61
           F Y+  D +G  ++G++   NA      L  + + P+ + E Q  ++   R      F++
Sbjct: 3   FSYRGKDDRGGVQQGLLGAPNADAAATELMRRGITPLAIREVQETESVIDRLNRLPIFRK 62

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            ++  +L +  RQ+  L ++G+PL   +R +AE +  P +  +L  V  ++  G T++ +
Sbjct: 63  KVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDVTTRLEGGTTMATA 122

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
           +  +P VF ELF +M+  GE +G LD    RL++  E  +  + +L+QAM YP+ +++  
Sbjct: 123 MQAHPKVFSELFIAMIHVGENTGMLDDAFRRLSEILELERDTKRRLKQAMRYPMFVIIAL 182

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFL-QHWGISLLVGLLMLIYLVR 240
           +  +  +   V+PK    F ++G  LP  TQ L+  S+FL  +W + L       + L +
Sbjct: 183 LSALMIVNFLVIPKFASVFNKLGADLPFLTQVLVGTSNFLLAYWYVMLFAVAAGGLLLRQ 242

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           W  T+   RL WDR  + LP+IG +   +  +RF+R  +   S+ +P+   + V  D   
Sbjct: 243 WKQTEQG-RLTWDRYKLKLPIIGPLLELITLSRFSRNFATMLSAGMPVTTALTVVADTTD 301

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N ++   +      +  G SL +    +++F P++L MIA GE++G ++ ML   AD  D
Sbjct: 302 NAWISSHIKDMRAGIERGESLLRTARHSEMFTPLILQMIAVGEETGSVDDMLNNVADFYD 361

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400
              +  +        P LI  M  +VL + +   +PI ++
Sbjct: 362 EDVDYGLKRLAESIEPILIVAMGILVLILALGVFLPIWDL 401