Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type IV pilus biogenesis protein PilC from Marinobacter adhaerens HP15

 Score =  211 bits (536), Expect = 4e-59
 Identities = 113/405 (27%), Positives = 222/405 (54%), Gaps = 8/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           + AF ++  D KG    G + G N   V+ +L++Q +VP +V        +     F   
Sbjct: 8   LQAFVWEGKDRKGNKATGEVSGTNLALVKAQLRKQGIVPSKV-------KKKSKPLFGGS 60

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           + I+  D+A++TRQLAT++++G+PL +    VA+  E   ++ +++A+R  +  G + + 
Sbjct: 61  KKITPFDIAMLTRQLATMMKAGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAG 120

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +P  F++L+ S+V +GEK+G L+ +L+R+A Y E  + ++ K+++AM YP  +VV 
Sbjct: 121 ALRKHPRHFNDLYCSLVDSGEKAGALEQMLDRIATYLEKSELLKKKVKKAMTYPAAVVVV 180

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A+ + A LL  VVP+    F   G  LP  TQ +++ S+++Q W    L+G++  ++L +
Sbjct: 181 AIIVTAILLVKVVPQFEALFTGFGADLPVFTQMVVNLSEWMQKWWFIGLLGIVGFVFLFK 240

Query: 241 WL-LTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
                        D+  + +PVIG++      ARF R LS   ++ +P++D +    +  
Sbjct: 241 EAKYRSKKFSDAIDKYTLKIPVIGEVLDKSAVARFGRVLSTTFAAGVPLVDALESVANAT 300

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N   +  +    + V  G+ L+ A+    +FP M + + A GE+SG L+ ML++ AD+ 
Sbjct: 301 GNAVYRDGINKIKDEVASGTQLQAAMRNADIFPVMAVQLTAIGEESGNLDEMLSKVADHY 360

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  V+    +  P +++++  +V  +++A  +PI +M  ++
Sbjct: 361 EAVVDDLVDNLSSLMEPLIMSVLGVLVGGLIIAMYLPIFQMGKVV 405