Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., MSHA biogenesis protein MshG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  203 bits (516), Expect = 8e-57
 Identities = 111/406 (27%), Positives = 219/406 (53%), Gaps = 6/406 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  ++Y+    +G+   G ++  +       L  + ++P+EV   +V  + S +Q F  K
Sbjct: 1   MPVYQYRGRSGQGQAVTGQLDAASESAAADMLLSRGIIPLEVKAAKVAKSFSLTQLFGSK 60

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
            G+   +L + TRQ+ +L +SG+P+   +  ++E +   R++  L  +  ++T G  LS 
Sbjct: 61  VGLD--ELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSS 118

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++  +P VFD LF SMV  GE +G L+    +L+ Y E  Q+ R +++ AM YP + V+ 
Sbjct: 119 AMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYP-IFVLI 177

Query: 181 AVGIVAFLL-AAVVPKIVGQFVQMGQALPASTQFLLDASD-FLQHWGISLLVGLLMLIYL 238
           A+G+   +L   V+PK    F + G  LP +T+ L+  S+ F+ +W + L++ L  +I +
Sbjct: 178 AIGLAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWPLMLVMLLGAIIGI 237

Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298
             W  T+   + +WD+  + +P +G I      AR+ R+ S+  S+ +P+   + +  D 
Sbjct: 238 RYWHHTEKGEK-QWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSLVADA 296

Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358
           + N ++  +++     +  G S+ +   Q+KLF P++L M+A GE++G+++ +L  AAD 
Sbjct: 297 VDNAYMHDKIVGMRRGIESGESMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADF 356

Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
            +   +  +        P LI ++A +VL + +   +P+ +M N++
Sbjct: 357 YEGEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDMLNVV 402