Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (559), Expect = 9e-62
 Identities = 129/405 (31%), Positives = 218/405 (53%), Gaps = 13/405 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRG- 62
           FE+K ++  G+   G + G +A ++R +LK Q + P        K  R +S    FK G 
Sbjct: 26  FEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNP--------KTVRKQSAAL-FKLGD 76

Query: 63  --ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             I+  D+A++TRQ+AT++ +G+PL   +  +    EK ++R +L  + +++  G  LSD
Sbjct: 77  PKITPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSD 136

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +   FD+L+  +VAAGE SG LD V +R+A Y E  + ++SK+++AM YP  +V+ 
Sbjct: 137 ALRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIV 196

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQ-HWGISLLVGLLMLIYLV 239
           A+ + A LL  VVP+    F   G  LPA TQ +L  S  LQ  W I L   +  +   V
Sbjct: 197 AILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIVAGVFLFV 256

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R       +R R D  V+ +P IG I      ARFARTL+   ++ +P++DG+  A    
Sbjct: 257 RAHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGAS 316

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N   ++ +L   + V  G  +  A+  T LFP M++ M+  GE+SG L+ ML + +   
Sbjct: 317 GNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIY 376

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  V+    +  P ++ ++  +V  +++A  +PI +M  ++
Sbjct: 377 EMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVV 421