Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  473 bits (1218), Expect = e-138
 Identities = 235/406 (57%), Positives = 324/406 (79%), Gaps = 1/406 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFA-F 59
           M AFEYKALDAKG+  KGVIE D AR  R +L++Q L+P++++    K A+++S GFA F
Sbjct: 1   MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALF 60

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
           KRGIS  +LALITRQ+ATLV +G+P+EE L+AV +Q EK R+ +M++AVR++V EGY+L+
Sbjct: 61  KRGISVAELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLA 120

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           DSL ++PH+FD+L+R+MVA+GEKSGHL+ VL RLADY E RQ+++SKLQQAMIYP++L +
Sbjct: 121 DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTL 180

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239
            A+G+V+ LLAAVVPK+VGQF  MG  LPA+T+FL+ ASDF+Q++G+ +++ L +L+ + 
Sbjct: 181 VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGLLVVLVLGILLVVF 240

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           + LL  P  ++++   ++ +PVIG++++GLNTARFARTLSI ++S++P+LDGMR+A +V+
Sbjct: 241 QRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVL 300

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N  V+  V  A   VREG+SL  AL  TKLFP MML+MIASGE+SG+LE ML RAADNQ
Sbjct: 301 QNMRVRAAVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQ 360

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           D  FES V +ALG+F P L+  MAG+VLFIVMA L PIL +NNL+S
Sbjct: 361 DREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLIS 406