Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Type II secretory pathway, component PulF from Sphingomonas koreensis DSMZ 15582

 Score =  283 bits (725), Expect = 5e-81
 Identities = 159/407 (39%), Positives = 245/407 (60%), Gaps = 3/407 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEV-VETQVKAARSRSQGFAF 59
           M AF Y+A  + G  KKG+IE  +A   R  L+EQ L+P+ V   ++ ++  S       
Sbjct: 1   MPAFAYRAATSAGAEKKGLIEATSAAAARAMLREQGLLPLAVDAASERRSIGSIKLPGLG 60

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
           + G+S  +LA  TRQ+ATLV S +P+EE LR  A QSE  R+ ++L+ VRA + +G + +
Sbjct: 61  RSGMSARELATATRQIATLVGSDIPVEEALRLAASQSEAQRVSSILLEVRAAILDGRSFA 120

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           ++LG +P  F E +R+ VAAGE SG L  VLE LA + ENRQ    KLQ A++YP +L  
Sbjct: 121 NALGTHPKTFPEFYRASVAAGESSGKLTQVLEHLAHFVENRQANSQKLQLALLYPGLLAT 180

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLM-LIYL 238
            ++G++  LL  V+P IV  FV  G  LP  T+ L+  S FLQ WG+ +L+  L+  +  
Sbjct: 181 VSLGVIVLLLVYVIPDIVKVFVSRGTDLPLLTRTLIAISGFLQAWGLYILIAALIGFVIY 240

Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298
            RW +  P  RL+  R         + +R  N ARFA +L+   SSA+P+++ +  A  V
Sbjct: 241 GRW-VANPANRLKVHRAFTERWPFRRFSRQHNAARFAGSLATLVSSAVPLVEALHAAAAV 299

Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358
             N++V+++ L  A  VREG SLR A+ +  +FP M+  ++ASGE SG+L   L+RAAD 
Sbjct: 300 TPNRWVRERALHVAARVREGISLRAAMTEAGVFPLMLTAIVASGEASGQLGPALSRAADE 359

Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
            D   ++  +  + +  P ++ LM G+VL +V+A L+PI+ +N+L++
Sbjct: 360 LDRELDAVTSAMVALVEPLVLLLMGGIVLMMVLAILLPIINLNDLVT 406