Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., general secretion pathway protein F, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  187 bits (474), Expect = 6e-52
 Identities = 126/412 (30%), Positives = 208/412 (50%), Gaps = 11/412 (2%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA+F Y A +  G   +GVI+ ++    R  L  +  VP+EV   +  A    S G    
Sbjct: 1   MASFSYTARNENGVKMEGVIDAESTEAARAILFSRGYVPLEV---KAGAGGGFSLGLGAL 57

Query: 61  RGISTP----DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGY 116
               +P    +L L T+Q  TL Q+G+P+ + L+ +  Q+E  R++ +   +   +  G 
Sbjct: 58  ADALSPIPPKELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKAIAAEMSQAIMGGA 117

Query: 117 TLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVV 176
           TL D+   +P VF EL+ SM+ AGE SG L  V++RL    E+  K+RS ++ A+ YP  
Sbjct: 118 TLYDAFRAHPKVFSELYCSMMRAGEASGALGEVMDRLVYLLEHEHKIRSDIKSALRYP-K 176

Query: 177 LVVFAVGIVAF-LLAAVVPKIVGQFVQMGQALPASTQFLLDAS-DFLQHWGISLLVGLLM 234
           +V+ A+ +  F LL  V+PK V  F Q    LP  T+  +     F  +W + L V +  
Sbjct: 177 MVMGALAVAFFVLLNLVIPKFVLIFSQARITLPWPTKIAIGMHYVFSTYWYVVLAVVVAG 236

Query: 235 LIYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRV 294
            +    W+ T+ D R   DR V+ LP +G + +    ARFA   +I  SS + +LD + V
Sbjct: 237 TVAYKYWVRTE-DGRYWRDRLVLRLPGVGPVIQKSVMARFASIFAILQSSGVSVLDALDV 295

Query: 295 AVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTR 354
             + + N  + ++     + +REG  + + L   + F P++++M+A GE+SG L+ ML  
Sbjct: 296 LNNTIGNAAIAREFTRIQDQLREGRGIAEPLRTARFFTPLVVNMVAIGEESGSLDAMLND 355

Query: 355 AADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMSR 406
            A + D   E  V        P LI  +A +V F  +A  MP+ ++  +  +
Sbjct: 356 VARHYDEEVEYAVAGMAEAIGPVLIVALAAVVGFFALAIFMPMWDLTQMAGK 407