Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

 Score =  289 bits (740), Expect = 9e-83
 Identities = 156/403 (38%), Positives = 252/403 (62%), Gaps = 3/403 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA F+Y ALD  GR ++G ++  +      +L+ + L P++++ +  K AR     FA  
Sbjct: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARVGR--FALG 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           +G+S  D ++ TRQLATL  S   LEE LR +A Q++KP+++ ++  V A V EGY LSD
Sbjct: 59  QGLSAKDRSMFTRQLATLT-SVSTLEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSD 117

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++G     F  L+R+MVAAGE SG L ++L+RLAD  E +Q++R+K+  A++YP+VL V 
Sbjct: 118 AMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVV 177

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A  +VA L+  V+PK+V QF  MGQ LP  T+ ++  S  LQ +G  ++V  ++ ++   
Sbjct: 178 ACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAFL 237

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
             L     +L  DR ++ LP+IG++ R ++ AR ARTL+   +S +P+L+G+ +    + 
Sbjct: 238 RALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVR 297

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N  ++  +      +REG +L  A+ + ++FPP++++M ASGE SG +E ML RAAD  +
Sbjct: 298 NAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLE 357

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNL 403
             FE+     L +  PA+I L+ G+V  IV++ L+PIL++NNL
Sbjct: 358 REFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400