Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., type II secretion system inner membrane protein GspF from Ralstonia sp. UNC404CL21Col

 Score =  322 bits (826), Expect = 9e-93
 Identities = 174/404 (43%), Positives = 258/404 (63%), Gaps = 2/404 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M AF Y+A DA G+  KGVIE D+ARQ R  L+ + L P+ V    + A  ++  G +F 
Sbjct: 1   MPAFRYEAADATGKTDKGVIEADSARQARTLLRARGLTPLLV--DALGAQATKRGGSSFG 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           + +S  + AL+TRQLA+L+ +G+PL+E L A+A+Q+E+  +  +L A+RA+V  G +LS 
Sbjct: 59  KRLSAQENALVTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSLSV 118

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +P  F +++R++V+AGE SG+L  VL RLADY E+R  + SK++ A  YP ++ V 
Sbjct: 119 ALAQHPKDFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVV 178

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A  IV FLL+ VVP++V  F    Q LP  T  +L  SDF+++WG    + L  +  L+R
Sbjct: 179 AFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIVLAAIGVLIR 238

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
            LL +P +RL W + +++ P+ GK+ RG NTARFA TL+I TS+ +PIL G++ A + + 
Sbjct: 239 NLLKQPALRLSWHKWLLTAPLFGKLVRGYNTARFASTLAILTSAGVPILRGLQAAGETLN 298

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N  +K  V  A+  VREG+SL +AL     FPP+++H+I SGE +G L  ML RAA  + 
Sbjct: 299 NVALKTNVEDASTRVREGTSLARALAAQNQFPPVLVHLIRSGEATGNLPAMLERAAQGEA 358

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
              E       G+  PALI  M  +VL IV+A LMPI+E+N L+
Sbjct: 359 QELERRTLFLTGLLEPALILTMGVVVLLIVLAVLMPIIEINQLV 402