Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 2e-56
 Identities = 106/405 (26%), Positives = 214/405 (52%), Gaps = 4/405 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  ++Y+    +G+   G ++  +       L  + ++P+EV     K  +S +    FK
Sbjct: 1   MPVYQYRGRSGQGQAVTGQLDAASEGAAADMLLARGIIPLEV--KVAKETKSFTLAQLFK 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +   +L + TRQ+ +L +SG+P+   +  ++E +   R++  L  +  ++T G  LS 
Sbjct: 59  RKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSS 118

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++  +P VFD LF SMV  GE +G L+    +L+ Y E  Q+ R +++ AM YP+ +++ 
Sbjct: 119 AMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIA 178

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASD-FLQHWGISLLVGLLMLIYLV 239
               +  L   V+PK    F + G  LP +T+ L+  S+ F+ +W + L++ L  +I + 
Sbjct: 179 IALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYWPLMLVILLGTIIGIR 238

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
            W  T+   + +WD+  + +P +G I      +R+ R+ S+  S+ +P+   + +  D +
Sbjct: 239 YWHHTEKGEK-QWDKWKLHIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAV 297

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N ++  +++     +  G S+ +   Q+KLF P++L M+A GE++G+++ +L  AAD  
Sbjct: 298 DNAYMHDKIVGMRRGIESGESMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFY 357

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  +        P LI ++A +VL + +   +P+ +M N++
Sbjct: 358 EGEVDYDLKNLTAKLEPILIGIVAAIVLVLALGIYLPMWDMLNVV 402