Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (568), Expect = 8e-63
 Identities = 134/405 (33%), Positives = 219/405 (54%), Gaps = 13/405 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRG- 62
           FE+K L+  G+   G + G +A ++R +LK Q + P        K  R +S    FK G 
Sbjct: 26  FEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNP--------KTVRKQSAAL-FKLGD 76

Query: 63  --ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             IS  D+A+ITRQ+AT++ +G+PL   +  +    EK ++R +L ++ +++  G  LSD
Sbjct: 77  AKISPMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSD 136

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           SL  +   FD+L+  +VAAGE SG LD V +R+A Y E  + ++SK+++AM YP  +VV 
Sbjct: 137 SLRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVV 196

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQ-HWGISLLVGLLMLIYLV 239
           A+ +   LL  VVP+    F   G  LPA TQ +L  S  LQ  W I L   +  +   V
Sbjct: 197 AILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSSWYIFLGAIVAGVFLFV 256

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R       +R R D  V+ +P IG I      ARFARTL+   ++ +P++DG+  A    
Sbjct: 257 RAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGAS 316

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N   ++ +L   + V  G  +  A+  T LFP M++ M+  GE+SG L+ ML + A+  
Sbjct: 317 GNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIY 376

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +   +  V+    +  P ++ ++  +V  +++A  +PI +M  ++
Sbjct: 377 EMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVV 421