Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 155 a.a., General secretion pathway protein H from Pseudomonas fluorescens FW300-N2E2

 Score = 59.3 bits (142), Expect = 3e-14
 Identities = 52/164 (31%), Positives = 73/164 (44%), Gaps = 30/164 (18%)

Query: 4   TRGFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDF 63
           +RGFTLLE+++V+VL+ +    V      S   EA+  AQ F + +  L E A+L G ++
Sbjct: 5   SRGFTLLELMVVIVLIGSVMGMVSLAIGPSPTREARQQAQDFIRVVQQLRERAVLDGLEY 64

Query: 64  GVRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRLFNP 123
           GVR  V  R    L+L + +GW       ++    L E L L  E  G     DD     
Sbjct: 65  GVR--VQPRGYQALRLES-QGW-----TAVSASQRLPESLTLGLEQDGHVVALDD----- 111

Query: 124 GSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSIFPKGQ 167
                                PQL +LSS E++PF L I   GQ
Sbjct: 112 -----------------ARGPPQLLMLSSDEISPFRLLIKVAGQ 138