Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 189 a.a., general secretion pathway protein H from Pseudomonas stutzeri RCH2

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 46/163 (28%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 5   RGFTLLEILLVLVLVSAS-AVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDF 63
           R FTL+E+L+V+VL+    +VAV++    S   E +  A+     + +L++EA+L  +++
Sbjct: 6   RAFTLIELLVVIVLLGILVSVAVLSVGGSSTSRELRDEARRLAALIGVLSDEAVLDSREY 65

Query: 64  GVRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRLFNP 123
           G+ ++ +  R+    L  D+   +W   +      + E ++LD EL G   +    L  P
Sbjct: 66  GLLVNSEGYRV----LRYDEAATRWLEVERRKVHKVPEWMRLDLELDGTPLE----LLAP 117

Query: 124 GSLFDEE--MFADEKKEQKQEPA--PQLFVLSSGEVTPFTLSI 162
               D+   +  D+++  ++ P   PQL +LSSGE++PF+L +
Sbjct: 118 TQREDDRAGLSRDDERTARRAPRLEPQLLILSSGELSPFSLRL 160