Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 189 a.a., general secretion pathway protein H (RefSeq) from Shewanella amazonensis SB2B

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 16/195 (8%)

Query: 5   RGFTLLEILLVLVLVSASAVAVIATFPVS-VKDEAKISAQSFYQRLLLLNEEAILSGQDF 63
           RGFTL+E+LLV++L+  +A ++  + P S VK     +A  F     L+ +EA+LSGQ  
Sbjct: 4   RGFTLIEVLLVVLLMGIAAASITLSLPGSGVKPVLDKAASQFLVATDLIRDEAVLSGQFL 63

Query: 64  GVRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRLFNP 123
           GV +D D  +        +  W K +ND++     ++ G+++   + G    +++     
Sbjct: 64  GVVVDEDNYQYVVYH---EGKWHKLENDRLLAAKAMEPGIRMSLVVEGLPLDQEE---ED 117

Query: 124 GSLFDEEMFADEKKEQK-QEPAPQLFVLSSGEVTPFTLSIFPK---GQEPDEQWRVTAQE 179
            S FDE    +   EQK + P PQ+ V  SGE++ F L+   +   GQE D    ++   
Sbjct: 118 ESWFDEPFIDEPTAEQKAKNPEPQILVFPSGEMSAFELTFLGRDDVGQEVDV--LISGDA 175

Query: 180 NGTLRLLAPGESDEE 194
            G L+L   G  D+E
Sbjct: 176 LGRLKL---GRGDDE 187