Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., general secretion pathway protein H (RefSeq) from Shewanella loihica PV-4

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 6   GFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKI---SAQSFYQRLLLLNEEAILSGQD 62
           GFTLLE+LLV++L+  +A AV  T+  S  D+ K    +A+ F     L+ +E ILSG  
Sbjct: 8   GFTLLEVLLVVLLMGLAAAAV--TYTTSGADQHKALERTARQFMAATELVLDETILSGHF 65

Query: 63  FGVRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRLFN 122
            G+ ID   +R  F+     K W+  Q D++     +  G+++   L G    ++D    
Sbjct: 66  IGIVID--KQRYEFVVYDEGK-WKPLQQDRLLAAKEMDPGVEMHLVLDGLPLTQEDE--E 120

Query: 123 PGSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSIFPKGQEPDE 171
             S FDE +    + E+K+ P PQ+ +  SGE++ F L+   K +   E
Sbjct: 121 DESWFDEPLIERSEDEKKKFPEPQVLLFPSGEMSVFELTFVGKDERGQE 169