Pairwise Alignments

Query, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., General secretion pathway protein J from Pseudomonas fluorescens FW300-N2E2

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 14  AGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRAMVIMDADFRQM 73
           +GFTL+E+++AIAIFA L + ++++ + V R+ + + +    +  LQRA+ +++ D  Q 
Sbjct: 5   SGFTLLELVIAIAIFALLGLASWRLFDGVVRTQQGAGQHEREVRALQRAVGVIERDVWQA 64

Query: 74  ALRQFRTDGEAPSEQILQWKESLLDSDQHGLLFVRLGWHNPQQQFPRGEVAKVGYRLFEN 133
                                ++L S +  L   R  W NP  Q PR E   V YRL   
Sbjct: 65  VA-----------------GSTVLASGR--LQLQRSHWPNPLDQ-PRSERQTVNYRL--- 101

Query: 134 RLERVWWRYPDTPAGQQGLISPLLTGVED-----WAVQFYLQGEWSKEWVPTNALPEAVK 188
               V WR      G+  +I      +ED     W V F  Q  W  E V  NA P A++
Sbjct: 102 -EAAVLWR---DSRGEGPVIVQQQKLLEDVRSLGWRV-FDAQRGWHDETVRGNA-PLALE 155

Query: 189 VTLRLKDYGEIERIYLTGG 207
           + +    + +I R+ L  G
Sbjct: 156 LVISTGRFQQIRRVLLLPG 174