Pairwise Alignments

Query, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., general secretion pathway protein J from Pseudomonas stutzeri RCH2

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 19/221 (8%)

Query: 14  AGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRAMVIMDADFRQM 73
           AGFTL+E+L+AIA+FA L +G Y++L  V +S+E    +  +L EL RA+   + D +Q+
Sbjct: 9   AGFTLLELLIAIALFALLGLGTYRMLEAVLQSDEAVRAQELQLRELSRAVWAFERDLQQV 68

Query: 74  ALRQFRTD-GEAPSEQILQWKESLLDSDQHGLLFVRLGWHNPQQQFPRGEVAKVGYRLFE 132
             R  R   G+  +  I Q      D     L   R GW NP     R  + +V +RL  
Sbjct: 69  VGRPIRDGFGDERNAFIGQLGG---DDGAPVLELTRAGWRNP-TGLRRANLQRVRWRLAG 124

Query: 133 NRLERVWWRYPDTPAGQQGLISPLLTGVEDWAVQFYLQGE--WSKEWVP----------- 179
             LERV+W   D     +  +  +L  V+   ++ YL  E  W +EW P           
Sbjct: 125 QNLERVYWVVLDRDLDSEPRVQRVLENVQGLQLR-YLDEEAVWHEEWPPFDFGRGSPEDA 183

Query: 180 TNALPEAVKVTLRLKDYGEIERIYLTGGGSLNMTQESVENA 220
              LP  +++++    YG + R+      +   TQ+++  A
Sbjct: 184 AERLPVGLELSIEHARYGRVTRVLRLPDAAEQTTQQALPGA 224