Pairwise Alignments

Query, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., general secretion pathway protein J (RefSeq) from Shewanella amazonensis SB2B

 Score =  119 bits (297), Expect = 7e-32
 Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 7   VSSRQN--MAGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRAMV 64
           +S R+N    GFTLIE+L+AIAIFA L + A  VL  V +++E++ + + RL  LQ+   
Sbjct: 1   MSLRENKPQRGFTLIEMLLAIAIFALLGLAANAVLGTVLKNDEVTQDFSNRLRYLQQGFG 60

Query: 65  IMDADFRQMALRQFRTDGEAPSEQILQWKESLLDSDQHGLLFVRLGWHNPQQQFPRGEVA 124
            ++ D  QM  R  R         +LQ    +LDS+   L F R+GW NP  + PRG + 
Sbjct: 61  AIERDLGQMVARTPRLLEGGRGTTVLQSGSDMLDSESEALSFFRIGWLNPDGKLPRGSLQ 120

Query: 125 KVGYRLFENRLERVWWRYPDTPAGQQGLISPLLTGVEDWAVQFYLQGEWSKEWVPTNALP 184
            V Y +   +LER ++ YP+   G Q L + L   V      F++  +W K  +    LP
Sbjct: 121 SVAYVVIAGKLERWYYPYPEPEFGAQPLKTVLFDKVLSVEYAFFVGDKWEKR-IEATTLP 179

Query: 185 EAVKVTLRLKDYGEIERIYLTGGGSL 210
           EA+ + + L+  G+I+R +L   GS+
Sbjct: 180 EAIAMEVELEGIGKIQRKFLLPKGSM 205