Pairwise Alignments

Query, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., general secretion pathway protein J (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (283), Expect = 3e-30
 Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 1/190 (0%)

Query: 15  GFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRAMVIMDADFRQMA 74
           GFTL+E+L+AIAIFA L + A  VL+ V  ++E++   + RL  LQ+    ++ D  QM 
Sbjct: 11  GFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFGAIERDLGQMV 70

Query: 75  LRQFRTDGEAPSEQILQWKESLLDSDQHGLLFVRLGWHNPQQQFPRGEVAKVGYRLFENR 134
            R  R         + Q    +LDS+   L+F RLGW NP    PRG +  V Y + E +
Sbjct: 71  ARTPRLLEGGRGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQSVAYVVREGK 130

Query: 135 LERVWWRYPDTPAGQQGLISPLLTGVEDWAVQFYLQGEWSKEWVPTNALPEAVKVTLRLK 194
           LER ++ YP+   G + + + ++  V      F+++ +W ++ V    LP+A+ + + ++
Sbjct: 131 LERWYFPYPEPEFGAEPMKTVIIDKVLSVEYSFFMEDKWERK-VEATKLPKAIAMEIEIE 189

Query: 195 DYGEIERIYL 204
             G+I+R ++
Sbjct: 190 GLGKIQRKFM 199