Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., General secretion pathway protein K from Pseudomonas fluorescens FW300-N2E2

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 37/334 (11%)

Query: 8   VALIVILLLLAVMVSIAATMAER--LFSQFQRATHQLNYQQAYWYSLGVEALAKKGIEQS 65
           +ALI  LL+ AV+  IA  M  R  LF++   A  QL  Q +     G++ L+++ +  +
Sbjct: 1   MALISALLIAAVVAVIAGGMLTRQTLFTRSLEA-EQLRVQGSARLQGGLQ-LSRQLLWDA 58

Query: 66  YQDSETINLSQPWALKEQTYPLDYGQV----RGKIRDMQACFNL-NALAGVKLTPDSVKK 120
            Q        QPWA K    P   GQ+     G++ D Q  FNL N +A  ++  + V+ 
Sbjct: 59  RQRDPLTRFGQPWA-KPIVIP-GSGQIDTPFEGQLEDEQGKFNLRNLVANERVDEEQVR- 115

Query: 121 PYLLTVLQALLEGLEVESYQAEVIADSTLEF---------IDKDDSVRTAYGVEDSYYES 171
                  + L + L V +     I D  +E          +D+     T      +  ++
Sbjct: 116 -----AFERLCQQLGVAAMVRTRIVDRVVEAYPRLLSPQRVDQAPKANTFNSGRATSPQA 170

Query: 172 MIPAYMAADTWLADASEWRAVQQVGGETMNKALPYVCALPTDQWRLNVNTLPAEQAALLA 231
                      L    + R+V+ V    ++   PYV  LPT+ W LN NT     +A + 
Sbjct: 171 DNTPQAPTRPMLRTLQDLRSVKGVNVRLLDTLAPYVTILPTNTW-LNGNT----ASAPVL 225

Query: 232 AMFSPTLSPESAKTLLEGRPFDGW-ASVDDFLAQSALTGVDNAVREEAKKYLSVDSHYFE 290
           A + P LS + A+ L+  R    W  +  DF+ +  +  +D      A   + + S +F 
Sbjct: 226 AAYVPGLSLQRAEALVRERDGGHWFINRGDFVNRLRMPELDT-----ASVKVGITSDWFR 280

Query: 291 LDAQVLVDTSRVRIRSLFYSNDKKTATVIRRRFG 324
           L  Q      RV + +L    + +   VI  R G
Sbjct: 281 LRGQARSGQRRVELEALLQRTEDRLPQVIWSRVG 314