Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., type II secretory protein PulK from Pseudomonas fluorescens FW300-N2E3

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 56/324 (17%)

Query: 3   AKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKKGI 62
           ++QRGVAL+ +LL++++ + +   M        +    QL++ Q        E  A + +
Sbjct: 2   SRQRGVALLSVLLVMSLALLLTGGMLRNHRLVVKSTAQQLHHVQLRQLVFSGERWALQRL 61

Query: 63  -EQSYQDSETINLSQPWALKEQTYPLDYGQVRGKIRDMQACFNLNA-LAGVKLTPDSVKK 120
            +   + S ++NL+Q WA     + ++ G +  ++ D+ A FNL+A LAG ++ P + ++
Sbjct: 62  RDPEMRASRSVNLAQTWAQATPPFEVEGGTLNIRVEDLAARFNLSALLAGGQIDPLTQQR 121

Query: 121 -PYLLTVLQALLEGLEVESYQAEVIADSTLEFIDKDDSVRTAYGVEDSYYESMIPAYMAA 179
              LL +LQ                       I   D   + +G                
Sbjct: 122 WVRLLALLQ-----------------------IRNPDLATSHFGA--------------- 143

Query: 180 DTWLADASEWRAVQQVGGETMNKALPYVCALPTDQWRLNVNTLPAEQAALLAAMFSPTLS 239
              L D S+ R    V GE + +  P +  LP +   LN+NT  A+Q   L  M S TL 
Sbjct: 144 ---LTDLSQLRVWPGVDGEVLRRLQPMLALLPGNA-SLNINTASAQQLMTLDGM-SETL- 197

Query: 240 PESAKTLLEGRPFDGWASVDDFLAQSALTGVDNAVREEAKKYLSVDSHYFELDAQVLVDT 299
              A+ L++ RP +G+ SV  F+    L G+     E     L + S +F +   V V  
Sbjct: 198 ---ARALVQQRPAEGYRSVQAFVEDPLLAGL-----ELGSHGLGLGSRWFRITVDVAVGQ 249

Query: 300 SRVRIRSLFYSNDK-KTATVIRRR 322
           SR+++ S    + K +   V++RR
Sbjct: 250 SRLQLVSEVELDAKTRQVNVVQRR 273