Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., general secretion pathway protein K (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (518), Expect = 3e-57
 Identities = 120/327 (36%), Positives = 188/327 (57%), Gaps = 8/327 (2%)

Query: 4   KQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKKGIE 63
           KQRGVALIV+LL++A++  IA  +  R     +R  +   Y QAYWY++  E LAKK ++
Sbjct: 7   KQRGVALIVVLLIVAMIAIIATNINSRNQISVRRTINLAQYDQAYWYAISAEELAKKVLK 66

Query: 64  QSYQDSE--TINLSQPWALKEQTYPLDYGQVRGKIRDMQACFNLNALA--GVKLTPDSVK 119
           Q   D++   ++  Q WA  +  +P + G++ G+I D+QACFNLNALA    ++     K
Sbjct: 67  QDLDDADEGKVHRQQYWAQADVVFPAEQGEIGGRISDLQACFNLNALAIETTEVENGQPK 126

Query: 120 KPYLLTVLQALLEGLEVESYQAEVIADSTLEFIDKDDSVRTAYGVEDSYYESMIPAYMAA 179
            P      + LL  L ++ + AE +  +  ++ID +D+V + +G ED+ YES    Y AA
Sbjct: 127 LPLPAVQFKGLLVALGMDDFSAERLTHTLKDYID-EDTVASPFGAEDADYESRTVPYRAA 185

Query: 180 DTWLADASEWRAVQQVGGETMNKALPYVCALP-TDQWRLNVNTLPAEQAALLAAMFSPTL 238
           +T ++  SE RAV     E   K  PY+C +P  D+  LNVNT+  EQAALLA MF   +
Sbjct: 186 NTLMSHRSELRAVIGFSQEVYLKLAPYICVIPGYDRQVLNVNTIEVEQAALLAGMFDNKI 245

Query: 239 SPESAKTLLEGRPFDGWASVDDFLAQSALTGVDNAVREEAKKYLSVDSHYFELDAQVLVD 298
           S   A++++  RP DG+ S+DDF +  +++G+      E+    S+ S YF L+A   VD
Sbjct: 246 SVGEAESIINQRPGDGYDSLDDFWSNGSISGLRQDKNLESS--FSLKSQYFLLEAGAKVD 303

Query: 299 TSRVRIRSLFYSNDKKTATVIRRRFGG 325
           ++  R++S+          V+ R++GG
Sbjct: 304 SATFRMQSVLRVGGNNQLDVLTRQYGG 330