Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., general secretion pathway protein K (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  212 bits (540), Expect = 9e-60
 Identities = 124/327 (37%), Positives = 189/327 (57%), Gaps = 7/327 (2%)

Query: 3   AKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKKGI 62
           AKQRGVALIV+LL++A++V IA  +  R     +R  +   Y QAYWY++  E LAKK +
Sbjct: 7   AKQRGVALIVVLLIVAMVVIIATNITSRNQLSMRRTLNLAQYDQAYWYAISAEELAKKIL 66

Query: 63  EQSYQDSE-TINLSQPWALKEQTYPLDYGQVRGKIRDMQACFNLNALAGVKLTPDS--VK 119
           +Q   DSE  ++  Q WA+ +  +P +YG++ GKI DM++CFNLNAL+      ++   K
Sbjct: 67  KQDLDDSEGRVHKQQYWAMSDVVFPAEYGEIAGKISDMRSCFNLNALSVTTKDVENGQPK 126

Query: 120 KPYLLTVLQALLEGLEVESYQAEVIADSTLEFIDKDDSVRTAYGVEDSYYESMIPAYMAA 179
            P      +ALL  L ++ + A+ +  +  ++ID +D+V + YG ED+ YE+    Y AA
Sbjct: 127 LPLAAKQYKALLVSLGMDDFTADHLTQTLKDYID-EDTVASPYGAEDAEYEARHVPYRAA 185

Query: 180 DTWLADASEWRAVQQVGGETMNKALPYVCALP-TDQWRLNVNTLPAEQAALLAAMFSPTL 238
           +T +   SE RAV     +   K LPY+C +P +D+  LNVNT+  EQAALLAAM    +
Sbjct: 186 NTLMNHRSELRAVMGYTQDIYLKLLPYICVIPGSDRQLLNVNTIDVEQAALLAAMVDNQI 245

Query: 239 SPESAKTLLEGRPFDGWASVDDFLAQSALTGVDNAVREEAKKYLSVDSHYFELDAQVLVD 298
           S   A++++  RP DG+A +DDF   S++  +     +  K    +DS YF L +   VD
Sbjct: 246 SVGEAESVINQRPGDGFAKIDDFYESSSMGSI--KWEDAMKSTFVIDSQYFLLASGAKVD 303

Query: 299 TSRVRIRSLFYSNDKKTATVIRRRFGG 325
            +  R+ S+          V+ R+FGG
Sbjct: 304 NAIFRMESVLKKGSGNKMDVLTRQFGG 330