Pairwise Alignments

Query, 407 a.a., type II secretion system protein GspL from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., general secretion pathway protein L from Pseudomonas stutzeri RCH2

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 91/362 (25%), Positives = 168/362 (46%), Gaps = 42/362 (11%)

Query: 56  SVVVLLAASDLILTSVEIPPGASRQLENMLPYLLEDEIAQDVEDVHFCV---LSKGRETA 112
           ++ ++L A      ++ +P   +R ++  L Y  E+ +A++V+D+H  +   L  GR+  
Sbjct: 43  AISLILPAEVCSFFAISLPTRKARWMQQALAYAAEELLAENVDDLHLALGETLPDGRQR- 101

Query: 113 DVVGVDRLWLRACLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGM 172
            VV + R  L   L+ L+  G  +  +  D   +PR +  L  L +G+  L+       M
Sbjct: 102 -VVAIRRQLLAGWLEQLRELGLLIVAIHVDADLLPREDTQL--LFVGERGLLGGIGETRM 158

Query: 173 AVDAQWLSLLAASDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVMQ------LL 226
           A         A+ DW Q       L A  P+P  +  +  E      G          L+
Sbjct: 159 A--------FASEDWPQ-------LSAFCPVPWHAQGDAAEAPAVVEGYRQVEDPYAFLV 203

Query: 227 TQEALTSKFNLLTGSFKLK--SSWLRYWQIWRKVAIAAGLFVAVSISYSLFQAHQYEAQA 284
           +Q A  +  NL  G F ++  ++ L YW   + +   AGL + V + ++L QA  ++ Q 
Sbjct: 204 SQRA--AAINLAQGDFAVEVGNTGLGYW---KPLFAVAGLILLVQLGFNLSQAWYFQRQG 258

Query: 285 DAYRAESERIFRSIFPDKQKIPTVTYLKRQMSDEMARLSGGASVGSVLKWLSPLPEALK- 343
           DAY   S  ++R +FP+  +I     ++ Q  D +AR SGG +    L+ L     AL+ 
Sbjct: 259 DAYADASLALYRELFPEDIRI---VNMRAQFDDHLARGSGGQA--GFLRLLDHAAAALED 313

Query: 344 GVNLQLQSIKFDSNRSEIRLEATSRDFQSFEQARTQL-EQYFAVEQGQLNKNGEQVFGVF 402
           G+ + +  + ++ +R ++ L+  + DF + E  R +L E   +V+ G  ++ G+ V    
Sbjct: 314 GIPVTIGQLDYNQDRGDLALQVQAMDFATLETLRRRLGEAGQSVQLGSASREGDGVSARV 373

Query: 403 VV 404
           V+
Sbjct: 374 VI 375