Pairwise Alignments

Query, 407 a.a., type II secretion system protein GspL from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretion pathway protein L (RefSeq) from Shewanella amazonensis SB2B

 Score =  200 bits (509), Expect = 5e-56
 Identities = 126/410 (30%), Positives = 208/410 (50%), Gaps = 19/410 (4%)

Query: 4   SVSEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAA 63
           +VSE L +RL ++ +    WL+WS ++QE+IASG++ G E+L  +   A  R V +L+ A
Sbjct: 2   TVSERLFIRLGTKAQDSCSWLIWSEQEQEIIASGELPGAESLASLTERAGNRPVDILVPA 61

Query: 64  SDLILTSVEIPPGASRQLENMLPYLLEDEIAQDVEDVHFCVLSKGRETADVVGVDRLWLR 123
           S + LT + +P    RQ    LP++LE+ IAQDV+D+HF V S+  E   V  V    ++
Sbjct: 62  SSMTLTEIHLPEKGQRQALKALPFMLEENIAQDVDDMHFVVGSRDGERLSVAAVAHEQMQ 121

Query: 124 ACLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGMAVDAQWL---- 179
             L  L   G   +R++PD LA+P      AA+ +G E LVR     G+ +   WL    
Sbjct: 122 TWLGWLADAGLKARRLVPDCLALPLESCEWAAMLMGQELLVRTGKGSGLNLPQDWLPVAL 181

Query: 180 -SLLAASDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVMQLLTQEALTSKFNLL 238
             +LA  D   +   Y  +     +P   +      + +   L M +L +  L +  NLL
Sbjct: 182 PMMLADKDTAPSVATYNDMN----IPGADV------KPQTLDLPMLVLARGVLQAPMNLL 231

Query: 239 TGSFKLKSSWLRYWQIWRKVAIAAGLFVAVSISYSLFQAHQYEAQADAYRAESERIFRSI 298
           TGS+K K    ++   W+   I   + + +S+       +Q   QA+  +AESE I+R +
Sbjct: 232 TGSYKPKRELSKHLLQWKSALIVVAVALLLSLVNKGLTIYQVGTQAEVLKAESEAIYRQV 291

Query: 299 FPDKQKIPTVTYLKRQMSDEMARLSGGASVGSVLKWLSPLPEALKGV-NLQLQSIKFDSN 357
            P   +I     L+ Q+ +E+ +LSG  S       L  L  +   V  L+  S++FDS 
Sbjct: 292 VPGSSRI---VNLRSQLDNEVRKLSGSGSGAEFFSMLQRLKTSFAAVPELKPNSLRFDSA 348

Query: 358 RSEIRLEATSRDFQSFEQARTQLEQYFAVEQGQLNKNGEQVFGVFVVKPK 407
           RSEIR++ T++D+   E+ +  + + F +E G +N + E V     ++ +
Sbjct: 349 RSEIRMQVTAKDYAQIEKFKELVGKDFELEAGAMNSSDEAVTSTLTLRSR 398