Pairwise Alignments

Query, 407 a.a., type II secretion system protein GspL from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., general secretion pathway protein L (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 3e-50
 Identities = 110/404 (27%), Positives = 205/404 (50%), Gaps = 9/404 (2%)

Query: 5   VSEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAAS 64
           +SE L +RL    E    WLVWS ++QE+IASG+++  + L  +   A  R V +L+ AS
Sbjct: 1   MSERLFIRLGRSAEQSCSWLVWSEQEQEIIASGELSDAQGLSTLTERAGNRPVDILVPAS 60

Query: 65  DLILTSVEIPPGASRQLENMLPYLLEDEIAQDVEDVHFCVLSKGRETADVVGVDRLWLRA 124
            + LTSV++P    RQ    LP++LE+ +A++V+++HF    +  E+  V  V    ++ 
Sbjct: 61  AITLTSVQLPEKGQRQALKALPFMLEETLAENVDELHFVPGPRNGESLSVAVVAHEQMQT 120

Query: 125 CLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGMAVDAQWLSLLAA 184
            L  L   G   ++++PD LA+P  E   AA++ G ++L+R ST  G+++DA W    AA
Sbjct: 121 WLSWLSEAGIKARQLVPDCLALPLQECQWAAMKFGPDYLLRTSTGSGVSLDASWFQ--AA 178

Query: 185 SDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVMQLLTQEALTSKFNLLTGSFKL 244
              +    E  P+  L    +L + +  E + +P  L M +L +  L +  NLL+G +  
Sbjct: 179 LPRLAEAQEETPI-TLASYSDLDI-QGVEVKPQPLDLPMLVLAKGILNAPLNLLSGIYTP 236

Query: 245 KSSWLRYWQIWRKVAIAAGLFVAVSISYSLFQAHQYEAQADAYRAESERIFRSIFPDKQK 304
           K  + ++  +WR  AI   + + +++       HQ   + +  + ++  IF+ +    + 
Sbjct: 237 KREYSKHLLLWRNAAIVILVALVLALVNKGLNIHQLNVEREGLQQQTGEIFKQVMGSSRM 296

Query: 305 IPTVTYLKRQMSDEMARLSGGASVGSVLKWLSPLPEALKGV-NLQLQSIKFDSNRSEIRL 363
           +     ++ QM  ++  L G     +    L  L      V  L+  S++FD  R+E+R+
Sbjct: 297 V----NVRSQMESQLRTLQGAGGGMAFFTMLDDLAVGFDKVPELKPTSLRFDGGRNELRM 352

Query: 364 EATSRDFQSFEQARTQLEQYFAVEQGQLNKNGEQVFGVFVVKPK 407
           + T++ +   EQ +  +  +F V+ G +N   ++V     ++ K
Sbjct: 353 QITAKSYAQIEQFKELISPHFQVDSGAMNSGEDEVTSTLTLRSK 396